All functions
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collapse_clusters()
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Collapse a clusters tree |
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compute_clusters()
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Compute DBSCAN clusters from a umapscan object |
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describe_clusters()
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Describe clusters of an umapscan object |
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explor_umapscan()
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Launch a shiny interface for umapscan object and clustering exploration |
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get_cluster_data()
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Get an umapscan cluster data |
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get_clusters_membership()
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Get cluster membership for each observation of an umapscan object |
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get_ids()
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Get ids from a node name |
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get_leaves()
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Get leaves from a node |
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get_noise_ids()
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Get ids from a 'Noise' child of a node |
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map_plot()
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Display an umapscan clustering as a leaflet map. |
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new_umapscan()
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Compute UMAP embeddings from a numerical data frame |
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plot(<umapscan>)
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Plot an umapscan object |
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plot_clusters()
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Plot clusters of an umapscan object |
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print(<umapscan>)
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Print an umapscan object |
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qualitative_palette()
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Return a qualitative color palette depending on the number of values
of its var argument |
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reinit_clusters()
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Reinit all clusters of an umapscan object |
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remove_cluster()
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Remove a cluster from an umapscan object |
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rename_cluster()
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Rename an umapscan cluster |
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umapscan_tree()
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Convert a clusters element of an umapscan object to a collapsibleTree |